PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS00785 FitnessBrowser__azobra:AZOBR_RS00785 (411 amino acids)

SeqID: AZOBR_RS00785 FitnessBrowser__azobra:AZOBR_RS00785
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598721: argininosuccinate synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS00785 FitnessBrowser__azobra:AZOBR_RS00785
MSGASGKQIKKVVLAYSGGLDTSVILKWLQETYQCEVVTFTADLGQGEELEPARKKAELL
GIKPENIFIDDLREEFVRDFVFPMFRANTLYEGTYLLGTSIARPLIAKRQIEIANQVGAD
AVAHGATGKGNDQVRFELGYYALRPDIKIIAPWREWDLSSRTRLIDYAEKNQIPIAKDKR
GEAPYSTDANLLHISYEGKALEDPWVEPFEDMYTRSVAPEKAPDTPTYVEVEFKRGDAVA
IDGKALSPAALLTELNRLGGENGIGRLDLVENRYVGMKSRGVYETPGGTILLAAHRAMES
ITLDRGAGHLKDELMPRYAELIYCGYWFSPERLALQALIDQTQEPVNGVVRLKLFKGNVT
VVGRKSPNSLYRMDYVTFEEDSVYNQKDAEGFIKLNALRLRLGAMARANVK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory