PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS01325 FitnessBrowser__azobra:AZOBR_RS01325 (329 amino acids)

SeqID: AZOBR_RS01325 FitnessBrowser__azobra:AZOBR_RS01325
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2494084: Glycerate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS01325 FitnessBrowser__azobra:AZOBR_RS01325
MTEKKKPLVVVTRKLPDVIETRMMELFDARLNSDDEPLTHAQLIDVVQTADVLVPTVTDR
IDREVIEKAGPQLRLIASFGTGVDHIDLKAARERGISVTNTPGVLTEDTADMTMALLLAV
GRRVAEGERLVRSGQWKGWGPTTMLGHRIQGKRLGILGMGRIGQALARRARAFGMSIHYH
NRRRVYPDVEQELEATYWESLDQMLARMDVVSINCPHTPATYHLLSERRLKLLRPHCFIV
NTSRGEVIDETALTRMLSKGEIAGAGLDVFEHEPAVNPKLLRLDNVVLLPHMGSATIEGR
IDMGEKVIINIKTFADGHAPPDRVLETLL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory