PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS02000 FitnessBrowser__azobra:AZOBR_RS02000 (227 amino acids)

SeqID: AZOBR_RS02000 FitnessBrowser__azobra:AZOBR_RS02000
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597667: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS02000 FitnessBrowser__azobra:AZOBR_RS02000
MAYAVPLWPQPTVPVAGGDPFPVRRIYCVGRNYAAHAREMGADPDREPPFFFMKPADAIV
ADGTAILYPPRTANLHHEIELVVAIGTGGRDIPVERALDHVYGYGVGLDMTRRDLQNAAK
KEGKPWDMGKGFDQSAPCGTLRRAADIGHPDKGSVTLSVNGELRQKGDLADLIWSVSETI
SYLSGLVELQPGDLIYTGTPEGVGPVVAGDRLEGAVEGVGSIAVTIA