PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS02380 FitnessBrowser__azobra:AZOBR_RS02380 (276 amino acids)

SeqID: AZOBR_RS02380 FitnessBrowser__azobra:AZOBR_RS02380
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS02380 FitnessBrowser__azobra:AZOBR_RS02380
LTDDVVGPLPGDYKSDVKPIWCPGCGDYSVLAGITRAMATMGLERHDTVVVSGIGCSSRI
PAYTSVYGYHTVHGRSLAVASGVKLARPELNVLIFGGDGDGFSIGGNHFLHACRRNVDMT
YIVMDNQVYGMTKGQASPTTEADWCESKLTPEGPGVNPIQPVALALACGANFVARGFSNN
PNEVARLIVEGVRHPGFSVIHILSPCVTFRPEQRNWKSTVHPYGREPTDDPNEAMRAVLE
DDGFGLGIFLAGNRRPFQPESAATRSIAQIEEGFAV