PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS03470 FitnessBrowser__azobra:AZOBR_RS03470 (397 amino acids)

SeqID: AZOBR_RS03470 FitnessBrowser__azobra:AZOBR_RS03470
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596359: succinyl-diaminopimelate desuccinylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS03470 FitnessBrowser__azobra:AZOBR_RS03470
MSTAAAAPSFDPCDPVAVAQALIRCPSVTPEDGGALGVLEAALAPLGFVCHRLRFEEEGT
APVDNLYARLGTEGPNFCFAGHTDVVPPGELKGWSIDPFAAEIHNGRLYGRGAVDMKGAI
AAFVAAAARHVKAVKETGDAPKGSISLLITGDEEGVAINGTRKVLDWLQAKGEKLDACVV
GEPTNPKALGDMIKIGRRGSMTAFLTVHGAQGHVAYPHLADNPLPRLARMLTAITAEPLD
AGTPHFQPSNLELTTIDVGNPAHNVIPAQGKATLNIRFNDLHTADTLLAWLRERLDGVGG
SYELDHFVSGDSFLTPPGPLTELVADAAERVTGRRPEYSTTGGTSDARFIKNFCPVVEFG
LVGQTMHKVDEHTALDDLTRLTDIYGEVLRNVFDRIG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory