PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS04385 FitnessBrowser__azobra:AZOBR_RS04385 (431 amino acids)

SeqID: AZOBR_RS04385 FitnessBrowser__azobra:AZOBR_RS04385
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598713: probable lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS04385 FitnessBrowser__azobra:AZOBR_RS04385
MIPRYTRPEMSRIWEPENRFRIWFEIEAHACDAQAELGVIPKEAAAAVWERGKWEIDRID
EIERETRHDVIAFLTNLAEHVGPEARFVHQGMTSSDVLDTCLAVQMTQAADLLLDDMDKL
LAVLKRRAYEHKDTVTIGRSHGIHAEPTTFGLKLAGHYAAFARGRERLVQARADIATCAI
SGAVGTFANIDPRVEQHVAAKMGLTPEPVSTQVIPRDRHAFYFSVLGVIASSIENLAVEI
RHLQRTEVREAEEYFHPGQKGSSAMPHKRNPVLSENLTGLARIVRAAVVPALENVALWHE
RDISHSSVERMFGPDATVTLDFALARLTGMMDKLVVYPERMQKNLDDLGGLVFSQRVLLA
LTQAGMSREDSYKAVQRNAMQVWEKGGNFLDLLSSDADVAKHISRETLAPMFDMTYHTKN
VDMVFKRVFGE