PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS04895 FitnessBrowser__azobra:AZOBR_RS04895 (557 amino acids)

SeqID: AZOBR_RS04895 FitnessBrowser__azobra:AZOBR_RS04895
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 6174923: Oligopeptide transport ATP-binding protein oppD]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS04895 FitnessBrowser__azobra:AZOBR_RS04895
MTLLRIQNLNLSADSGKPILRDVSLTLEHGQILALIGASGSGKTTLALTALGHMRPGVRH
VSGQVLFQGQDLLRMSRRALARLRGRKLAYIAQSAAVSFNPRIRLDRQVTESSRIHHTMS
PDAAHARAREVYRTLDLPTGEAFYNRFPHEVSGGQLQRFMIAMGLHEMPEILICDEPTSA
LDATTQVEVLKALDTGIRASGTAAILVGHDIAQVVQVATHILVMRNGEVVERGTVEQILH
HPEHPYTRQLLEMHRGFDAESGTMAETVAASATAASPSDRTDRTPLLEVRDLAVCYDTGG
FAVKALSGASLTLNGGEMMAVVGESGSGKSTMARAIAGLVQPSHGDVLVNGRLMERDVLK
RPLPMRRAVQITFQSADTSLNRHHTVGRILGQVLTFFGERSKERRAERIRELLEQVHLPA
DYVDRKPSQMSGGEKQRVNLARSLAARPDVLICDEITSALDNIVAASVLDLINELKRELN
IGILFISHDLSAVAAMSDKIMVLRNGEVVEQGPTAQVLGAPRHPYTRLLRSSVAAMRLGW
LEEASALHRSLRDELGA