PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS06560 FitnessBrowser__azobra:AZOBR_RS06560 (587 amino acids)

SeqID: AZOBR_RS06560 FitnessBrowser__azobra:AZOBR_RS06560
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS06560 FitnessBrowser__azobra:AZOBR_RS06560
MPEQKLTGAQIVIKALKDQGVDIIFGYPGGAVLPIYDAIFQQNDIKHILVRHEQAAVHAA
EGYARSTGKVGCVLVTSGPGATNAVTGLLDALCDSIPLVCLSGQVPTHLIGNDAFQEADT
TGITRPCTKHNYLVKDVNQLARTMHEAFYVARSGRPGPVLVDIPKDVQFADGTYIPPTEV
KHKTYRPQVKPEIARVEEAIELIATAKRPIFYTGGGVVNAGPIAAKLLTQFVKMTGFPIT
STLMGLGAFPASDPQWLGMLGMHGTYEANLAMYNCDVMINIGARFDDRVTGKLSEFAPGS
KKIHVDIDPSSINKNVAVDIPIVGDAGAVLEDMIRIWKARQKRADQTALKEWWGQVEGWR
ARNCLNYNRTEAVIKPQYALERLREALRGKNHYVTTEVGQHQMWAAQFLPFDEPNRWMTS
GGLGTMGYGLPAAIGAQLAHPDAIVVDVSGEASFLMNMQEIGTAVQYRAPVKIFILNNKY
MGMVRQWQELLHGSRYSNSYSEALPDFVKLAESWGCVGLRATTVAEVDEVIEKMLAVTDR
PCIIDIAVDPKENCFPMIPGGKAHNEILFGPEDSPSDATPEDGMVLV