PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS06730 FitnessBrowser__azobra:AZOBR_RS06730 (772 amino acids)

SeqID: AZOBR_RS06730 FitnessBrowser__azobra:AZOBR_RS06730
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS06730 FitnessBrowser__azobra:AZOBR_RS06730
MMKFGIGQPVPRTEDARLLTGGGRYTDDVSLPGQTHAVFVRSPHAHADIRGIDAAEAAAQ
PGVLGVFTVADLEADGVQPIPCAAALTQRDGSPYVAPPRPALAKGRVRHVGDPVAVVVAE
TLDAARDAAELVMVDYDDRPAIAGTAEALEAGRPQVWDEAPGNLCFDWEQGEEAAVESAI
AKAARVVELEIVNNRVVANPMEGRACLAAVEAETGRLVIYVTSQGVHGLRKQFAQLFGLP
EEKFRVITTDVGGGFGMKLFNYPEYMVCLFAARRLNRPVKWAAERTEGFLSDDHGRDHVS
RARLALDGDGRFLGLRVDTVANLGAYLSNYGPFIPTDAGSAMLVGSYTTPAVYVRVKGVF
TNTQPVDAYRGAGRPEAAYLLERLIDHAGRVTGLGPAEIRRRNFIPPAAMPYATPMGQTY
DTGEFEQNLRDGLELSDHAGLPARKAAAKARGKLRGAGIATYIEACAGGGAEQATVQVNG
DGRIILMIGTQTNGQGHETAYKQIIADRLGVPPEDVEVIQGDTDRVSWGAGTGGSRSVPV
GGAALAEGAARVVTKATEVAADLLETAAVDVEFVEGRFSVVGTDRSVSFKEVAAKAAAQG
PIAFTEVARWTPPANTFPNGCHIAEVEVDPDTGVVEVVGYTVVDDFGTVVNPLLVMGQVH
GGVAQGIGQALQERVVFDPDSGQLLSGSFMDYQMPRAVDVPDIRIKLNCVPSTTNALGMK
GAGEAGAIGAPPAVINALVDALSDYGIEHIDMPATPLSVWTAIQTRSKAAAE