PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS07455 FitnessBrowser__azobra:AZOBR_RS07455 (357 amino acids)

SeqID: AZOBR_RS07455 FitnessBrowser__azobra:AZOBR_RS07455
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595847: anthranilate phosphoribosyltransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS07455 FitnessBrowser__azobra:AZOBR_RS07455
MSTPSAPHGDLTDMKAILAKVAAGNALNEPEAALAFDIIMSGNATPSQMGGFLMALRVRG
ETVDEITGAARVMRAKAIPVEAPDGTIDTCGTGGDGSGTYNISTAAAVVIAACGVPVAKH
GNRAMSSKSGAADVLGALGVNLDCDMGLVRKALWDARIGFLMAPRHHLAMRNVGPTRVEL
GTRTIFNLLGPLSNPASAKRQLLGVYAKQWVEPLAHVLKRLGSEAAWIVHGSDGLDEITT
TGPTTVAQLKDGEVTVFEIEPEQAGIFRARPELLKGGDAHVNAEAIRALFDGVQGAYRDI
VLLNAAAALHVAGKAGDLKEGVEQARHAIDSGAARAVLQHLVSITNSSISNEPVAAP