PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS07490 FitnessBrowser__azobra:AZOBR_RS07490 (503 amino acids)

SeqID: AZOBR_RS07490 FitnessBrowser__azobra:AZOBR_RS07490
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16129225: component I of anthranilate synthase [Escherichia coli K12]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS07490 FitnessBrowser__azobra:AZOBR_RS07490
VKVQPEFAAFHTAYEAGKPQVVWTTLVSDLETPVSAYMKLADGRPFGFLFESAERGAGSR
RDRYSVIGFKPDLVWRCRRDRAEVNRNALHDRDAYEPIDAAPLESLRALINESRIDLPDA
LPPMAAGLFGYLTYDMVRLMERLPDDNPDELGIPDAILSRPSIVAIFDSHTDSVTLVTPV
WPKPGVDGAAAYGDARERLMDAVADLERPLPYRREPRTKDGLPLAWTSNTTREEYHAIVE
RAKEYIRAGDIFQVVPSQRIRFPFKPSPLALYRTLRRLNPSPFLFHCDFGELSVVGSSPE
ILVRVRDGNVTVRPIAGTRKRGATAAEDQALAEDLLSDPKELAEHLMLLDLGRNDVGRVA
RTGTVKVTQKMIVELYSHVMHIVSNVEGDLDPKHDALDALIAGFPAGTVSGAPKVRAMQI
IDELEKARRGVYAGCVGYFGASGAMDTCIALRTAVLKDGMMYVQAGGGVVADSDPEAEYQ
ETVNKSMALIRAAEETVRETSAQ

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory