PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS07950 FitnessBrowser__azobra:AZOBR_RS07950 (420 amino acids)

SeqID: AZOBR_RS07950 FitnessBrowser__azobra:AZOBR_RS07950
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596696: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS07950 FitnessBrowser__azobra:AZOBR_RS07950
MTTTDPRALLTDMFRAAVASAQPALCVPPHLPEPPKGRTVVVGAGKAAASMAKAVEDHWK
GPLSGLVVTRYGHNVPCERIEVVEASHPVPDEAGQQAAKRILDIAASLGPDDLMLCLISG
GGSALLALPAPGISMADKQAVSKALLRSGANITEMNCVRKHLSAIKGGRLAAATKARVVS
LVISDVPGDDLSVIASGPTVPDPTSYADALAVLEKYGISPPQPVMDHLLAGRDESPKPGD
PRLERVSTILVATPQMALERAAEVARKAGVTPVILGNALEGESREVALVHAGIARQIVEH
DQPAAKPCVLLSGGETTVTVRGKGRGGRNAEFLLALTVALDGMKGVHALAADTDGIDGTE
DNAGALLSPDTLARAAEAGVNAKERLADNDGYSFFSALGDLLVTGPTLTNVNDFRAVLVV