PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS08560 FitnessBrowser__azobra:AZOBR_RS08560 (796 amino acids)

SeqID: AZOBR_RS08560 FitnessBrowser__azobra:AZOBR_RS08560
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS08560 FitnessBrowser__azobra:AZOBR_RS08560
MANPTGIGASVRRREDARFLTGRGTYTDDINRPGQTHAVFVRSPYAHARITGIDAAEAMR
APGVIAVLTGADMEADKVGSLPCGWQIHSKDGSPMKEPPHFPIARDRARYVGDAVAVVIA
ETREQAKDAAELVMVDYEELPAAVTSLKALEGGAPLVHDDVGGNLCFDWHLGDAAAVDAA
FSQAAHVAKLDLVNQRLVPNAMEPRAALGEYDRATGEHTLTTTSQNPHVIRLLMGAFVLG
IPEHKLRVVAPDVGGGFGSKIFHYGEEAVVTWAAKKVGRPVKWTAERSESFLTDAHGRDH
VSHAELAMDKDGNFLALRVATIANMGAYLSTFAPSIPTYLYATLLAGQYKTPAIYAEVKA
VFTNTVPVDAYRGAGRPEACYLIERLVEVAAAETGIDKAELRRRNFVPASAMPYQTPVAL
QYDTGDFAKNLDIALPLVDYDGFAARKAESARRGKLRGIGFATYIEACGIAPSNVAGALG
ARAGLYESAEVRFHPTGSVTVFTGSHSHGQGHETTFAQLVSERFGVPIENVEIVHGDTSK
IPFGMGTYGSRSLAVGGSAIVKAMDKVERKAKKIAAHMLEAAEADIEVKDGRFVVAGTDK
ALTIGDIALQAYVPHNFPLDELEPGLDEQAFYDPKNFTYPNGCHVCEVEIDPDTGVVQVV
NFAAVDDFGRVINPLIVEGQVHGGLVQGIGQALYENCVYDEDSGQLITGSYMDYCMPRAD
DVPSFTVRYHEDQPCTHNPLGVKGCGEAGTIGASAAVMNAVVHALSEYGVTHLDMPATPE
RVWQAIRRHTPAQAAE