PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS08575 FitnessBrowser__azobra:AZOBR_RS08575 (698 amino acids)

SeqID: AZOBR_RS08575 FitnessBrowser__azobra:AZOBR_RS08575
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [19 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS08575 FitnessBrowser__azobra:AZOBR_RS08575
MSASPQEADNKIRQAIDRENPSTVVAFEGVAGKAVFAIAVAFSLFQIWTAAFNPLSSMVV
RSVHVGFLLLMTFTLFGFRQEAERRSVPWYDWLLGLGAFALGLYHYVFEVDLIQRAGDPN
TTDLIVGALTIALVFEAARRIMGWALPIMCGVFIPYALFGRHLPFGLAHRGYDVDQVIDN
LYLSTEGIYGTPTFVSATFIFLFILFGAFLERAGMIKLFNDVSLGLVGHAKGGPAKVAVI
SSGFMGTINGSGVANVLTTGQFTIPLMMRFGYRPAFAGAVEATASMGGQIMPPVMGAAAF
IMAETIGVPFSDIAIAAAIPAILYFGSAFWMVHLEAGKHNLVGLPKDQCPSVLGALKESW
YLILPLAALVYLLFSGFTPLFAGVIGIALTVALILGTRIVGFIGPTALRVGFWVVLGLIA
AALWRMGLRTEHLAFAIVGLLVLPCLALKGGRETLALLVQSLADGAKNAVGVGVACALVG
VLIGILTLTGLASSFASTIMDLSGGNLLIALLLTMLACIVLGTGLPTTANYIITAAIAAP
ALLQMGVPLIVSHMFVFYFGIMADLTPPVALAALAASSICRAGHMEIGWIATRVAMAGYV
VPFMAVYDPALMLQTDDPLAVAYVLFKALISIGLWGAATIGYFWTPMNWAERVFAAAAAF
LFVLSLPVTDEAGFVMTAAFLLWQRHRLRRLGRTSAPA