PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS08705 FitnessBrowser__azobra:AZOBR_RS08705 (334 amino acids)

SeqID: AZOBR_RS08705 FitnessBrowser__azobra:AZOBR_RS08705
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595596: cystathionine beta-synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS08705 FitnessBrowser__azobra:AZOBR_RS08705
VDIRTGFIGSIGNTPLIRLEGPSKATGCEILGKAEFLNPGGSVKDRAALAIVRDAERRGL
LRPGGTIVEGTAGNTGIGLALVGNALGYRTVIVMPETQSQEKKDMLRLIGADLRLVPAVP
YSNPDNYVRYSGRLAEELAKTEPNGAVWANQFDNVANREGHRLTTGPEIWTQTEGRIDAF
TCAVGSGGTLAGVGLALKERNPDVRIVLADPMGASLYHHYAHGTLKAEGSSITEGIGQGR
ITANLEGAPVDQALQITDEEALPVIFDLIKSQGLVLGGSSGINIAAAIRIAKEMGPGHTI
VTILCDGGQRYQSKLFNPAFLREKNLPVPDWLDS