PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS08840 FitnessBrowser__azobra:AZOBR_RS08840 (387 amino acids)

SeqID: AZOBR_RS08840 FitnessBrowser__azobra:AZOBR_RS08840
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141512: Maltose/maltodextrin import ATP-binding protein malK]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS08840 FitnessBrowser__azobra:AZOBR_RS08840
MAVQPIRKPTRLEPWQDPGQKPYVRIEKVTKTFGDFVAVDEVSLSIYRGEFFALLGGSGS
GKTTLLRMLAGFETPTEGKIFIDGVDMAGIPPYERPVNMMFQSYALFPHMSVEQNVAFGL
KQDGVAKAEIKERVGAILDLVQLGQFGKRKPHQLSGGQRQRVALARSLVKRPKLLLLDEP
LGALDKRLRERTQFELVNIQEKLGVTFIVVTHDQEEAMTMSSRIAVMNHGVIAQTGTPTE
IYEYPQSRFVAEFIGSVNMFEGRVVEDQADHVLIRSEDAGCDLYINHAVAVPAGATVGVA
VRPEKIALSKEPPANAATNADGRNVTSGIVREIAYLGDVSIYLVELKTGKTVRVTAPNVV
RRTEMPITWDDEVHLSWRPFAGVVLTQ