PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS08850 FitnessBrowser__azobra:AZOBR_RS08850 (447 amino acids)

SeqID: AZOBR_RS08850 FitnessBrowser__azobra:AZOBR_RS08850
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595493: probable glutamine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS08850 FitnessBrowser__azobra:AZOBR_RS08850
MGFMEDFIKKNRITEVECLVPDMSGIARGKIVPAEKFLRILRDRGLRLPEAIFVQTVTGE
YPEDDSVTSDENSDIYMIPDERTIRFVPWYEEPTAQVITDCVYADGSPVNFSPRHVLKRV
LSLYEERGWKPMVAPELEFFLVQVNKDPDYPLVPPVGRNGRVESGRQAFGIDAVNEFDPI
FEMVYDFCEAQDIDIDTLTHEAGAAQIEINFNHGDALELADQAFLFKRTAREAALRHQVY
ATFMAKPMQNEPGSAMHIHQSVVDADSGRNLFSDANGADTPLFMSHIAGLQKYLPYAMPL
LAPNVNSYRRLVPNSDAPINVHWGRDNRTTGLRVPVSPADSRRVENRVAGADANPYLAIA
ASLACGYLGMAQGLEPTDPVKGSAYRLAFTLPRHQGDALQKFNACKPLKEVLGEKFLDAV
TCVKEAEYEAYHRVISSWERENLLLNV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory