Running PSORTb v3.0 on AZOBR_RS09600 FitnessBrowser__azobra:AZOBR_RS09600 (226 amino acids)
SeqID: AZOBR_RS09600 FitnessBrowser__azobra:AZOBR_RS09600 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Cytoplasmic [No details] ECSVM- Unknown [No details] ModHMM- CytoplasmicMembrane [4 internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- Unknown [No matches against database] SCL-BLASTe- Unknown [No matches against database] Signal- Non-Cytoplasmic [Signal peptide detected] Localization Scores: CytoplasmicMembrane 9.83 Extracellular 0.13 Periplasmic 0.04 OuterMembrane 0.00 Cytoplasmic 0.00 Final Prediction: CytoplasmicMembrane 9.83 -------------------------------------------------------------------------------
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Predict transmembrane helices and signal peptides: Phobius
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>AZOBR_RS09600 FitnessBrowser__azobra:AZOBR_RS09600 MKILDHLEEILIAFLMAAATTIIFISVAHRYAAGFPIIQDYILHWNLAWAQELCIYMFVW MAKFGAAYGVRTGIHVGVDVLINKLSTPLRAKFIVFGLLAGATFTGVVGTMGSTFVWHMS DTEQVSADLEWPMWIIYLAIPLGSYLMCFRFLQVMVNFLRTGELPHHDHGHVEGLEEDTT DPQRAAQDVNWYEMDDNLHPHDIAHHEGRKPGNGPDSAKGPKENDR
Lawrence Berkeley National Laboratory