PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS09680 FitnessBrowser__azobra:AZOBR_RS09680 (451 amino acids)

SeqID: AZOBR_RS09680 FitnessBrowser__azobra:AZOBR_RS09680
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 81620441: Bifunctional protein glmU]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS09680 FitnessBrowser__azobra:AZOBR_RS09680
MTQHRPLACVILAAGKGTRMKSDLPKVLHRVAGQPMVGHVLSAVRALDPDHVVVVVGPGM
DNVADAVAPYPTAVQHEQRGTADAVRAAFGLLEGFDGDVVVLYGDTPLVTPDTLRAMVAA
RRQPNDPAVVVLGMRPDDPGAYGRLILNARGGLEKIVEYLDASEEERQVSLCNAGLMAFD
GARMFDLINRIGNSNAKSEYYLTDVVQIARSNGMACAVVEAAPAEVVGVNSRAELSEVEK
LIQRRLRKAAMDNGATLTDPDSVTFCVDTRLGRDVIVGPHVVFGPGVVVADRVEIKAFSH
LEQVRVDSGAQVGPYARLRPGAEIGPDAHIGNFVEIKNAKIEAGAKVNHLTYIGDARVGA
KANIGAGTITCNYDGYAKSHTDIGAGAFIGSNTALVAPVRVGDGAIVGAGSVVTTDVEGD
ALVVARGRQQAYTGWAKRFRERKQNEKAKKA