PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS10545 FitnessBrowser__azobra:AZOBR_RS10545 (470 amino acids)

SeqID: AZOBR_RS10545 FitnessBrowser__azobra:AZOBR_RS10545
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598930: threonine synthase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS10545 FitnessBrowser__azobra:AZOBR_RS10545
LKYVSTRGQAPVLGFEEVLLAGLARDGGLYVPDSWPQFSADEIRAMRGLPYSEIAVRVML
PFLGGAIAEDDFRAIVKDAYASFDHAAVVPLVQLDQRTWVMELFHGPTLAFKDVALQLLG
RLFDHVLAKRGKRVTIVGATSGDTGSAAIEACRDRQNVDIFILHPKGRTSEVQRRQMTSV
LSDNVHNIALHGTFDDCQDLVKALFNDMAFRDKMGLSAVNSINWARIMAQIVYYFAAAVA
LGAPDRKVAFTVPTGNFGNVYAAYGARAMGLPVERLVVGSNANDILARFFASGTMSAAPV
VPTLSPSMDIQISSNFERLLFDLLGRDGAAVQAAMDGFRAEGKFAVTDAQLAEAHAIFAA
GRADDARTMDVIKEVWEKTGGYQVDPHTAVGIHSAATAPVDPSVPVVVMATAHPAKFPDA
VETATGRRPVLPPRLADLYEREERLSELPNDVAAVQEFVVARARAAKEAA