PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS11025 FitnessBrowser__azobra:AZOBR_RS11025 (481 amino acids)

SeqID: AZOBR_RS11025 FitnessBrowser__azobra:AZOBR_RS11025
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 57015393: 3-isopropylmalate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS11025 FitnessBrowser__azobra:AZOBR_RS11025
MRETTPITVARGDGIGPEITDAVLHVMEAAGARLKVEEVPAGEQVYRRGHLGGLDAAGWG
SIRRTRVFLKGPITTPQGYGNKSLNVTARTTLGLFANVRPCVSHHPYVRTRHPRMDVVII
RENEEDLYAGIEHRQTDDVIQSVKLISRPGSERIVRYAFDYARANHRRKVTAFVKDNVMK
MTDGLFLKIFNEIAAEYPEIKADHLIVDIGAARLADQPERFDVIVTLNLYGDIVSDIAAQ
ITGSVGLAGSANIGDACAMFEAIHGSAPMIAGQGIANPSGLLMAAVMMLVHIGQGDVAAR
IHNAWLKTIEDGVHTVDIFNRGVSRQRVGTHAFADAVVERLGQMPVTLPTVGYAVTARPA
YESGVRLSPRRKAVKELVGVDVFLHWPGGNPDELAGLVLPVATPALRLSSISNRSQKVWP
EGNIGVFCTDHWRCRFLAPEGVAVGHPDIVELLSGLARAGLDFTQTENLCNFDGKSGFSA
T

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory