PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS12015 FitnessBrowser__azobra:AZOBR_RS12015 (447 amino acids)

SeqID: AZOBR_RS12015 FitnessBrowser__azobra:AZOBR_RS12015
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600629: probable biotin carboxylase subunit of a transcarboxylase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS12015 FitnessBrowser__azobra:AZOBR_RS12015
MFEKVLIANRGEIALRIHRACREMGIQTVAVHSTADADAMHVRLADESVCIGPASARESY
LNIPAILSAASITGADAIHPGIGFLSENAQFAEMVEEHGFTFIGPTAEHIRIMGDKVTAK
KTVMEQGLPVVPGSDGPVPTLEEAEKIGRETGYPILIKAAAGGGGKGMKVARNPDQLKEA
YQLARGEARAAFGNDEVYIEKYLGKPRHIEIQLLGDEHGNCVHFGERDCSVQRRHQKVIE
EAPSPALNAEQRAFIGDLAAKTAAAIGYRGVGTMEFLFEDGQFYFIEMNTRLQVEHTITE
MITGIDLVREQIRVATGAPLGYGQADIRFQGHSIECRVNAEHPETFIPSPGKIDGYHAPG
GLGVRVDSALYDGYRIPPHYDSLIAKLVVHGTTRNECLMRLRRTIEEYVIGGVDTTLPLH
QRIIAQQAFIDGNYDIHWLEQLMGMKK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory