PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS14580 FitnessBrowser__azobra:AZOBR_RS14580 (398 amino acids)

SeqID: AZOBR_RS14580 FitnessBrowser__azobra:AZOBR_RS14580
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1170927: Homoserine O-acetyltransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS14580 FitnessBrowser__azobra:AZOBR_RS14580
MRSLAKRLGGLALAAGLFCAAPALAFEGLVEKKVFEMPSYTTVGGGTIKNVRIGWESYGK
LNDARDNVILVTHFFSGNSHAAGKYKMEDPAPGYWDSIIGPGKPLDTDKFFIISSDTLVN
LSPKDPTVTTTGPASVNPDTGKPYGMSFPVVTIRDFVNVQKALLDSLNVKSLHAVMGGSM
GSLQALEWGATHPEMVKRVVAVIGGAEADPFLIGWLNLWAAPIRVDPNWQGGDYYGKAEP
KAGLTEALKLVTLHARHWKWADATFGRGWAEEGKDPAASMNNQYAIEAWLDKAAAARAAV
SDANHFLYLVKANQTFLVGGGGSLDEGLAKIKAPVLLIPSADDLVFPPERAMRPLKERLE
KQGIAVTYTDAITTSLGHLDGIANIAKAGDAISAFMAK