PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS14700 FitnessBrowser__azobra:AZOBR_RS14700 (433 amino acids)

SeqID: AZOBR_RS14700 FitnessBrowser__azobra:AZOBR_RS14700
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS14700 FitnessBrowser__azobra:AZOBR_RS14700
MDQTTASIVVVVTMLLMLGTGIWVALALAGVGFVAMALFTTRPVGMVMATNIWGASTSWT
LTALPLFIWMGEILFRTRISSDMFKGLAPWTGWLPGRLMHVNIVGCTIFAAVSGSSAATA
ATIGRMTIPELTRRGYDPMMIVGSLAGAGTLGLLIPPSIIMIVYGVAADVSIARLFIAGV
IPGIVLTGLFMLYVGGWSLLNPDRVPPREARQSLMEKIRDTGSLIPVMLLIAGVLGSIYA
GIATPTEAAGIGVLGSLLLALVTGTMSWATFRDSVMGAAHTSCMIGFILAGAAFLTVAMG
YTGIPRLLAEWITSMQLTTASLLVVLTLFFIVMGCFLDGISMVVLTTSVILPMVQNAGID
LLWFGIYIIIVVEMAQITPPVGFNLFVLQSMTGKNIFTIAKASLPFFLMMIVMVALLWIF
PGMVSWLPSLMIG