PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS14955 AZOBR_RS14955 formate dehydrogenase subunit beta (521 amino acids)

SeqID: AZOBR_RS14955 AZOBR_RS14955 formate dehydrogenase subunit beta
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 2499313: NADH-quinone oxidoreductase subunit 1 (NADH dehydrogenase I chain 1) (NDH-1 subunit 1)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS14955 AZOBR_RS14955 formate dehydrogenase subunit beta
MSEPLHTIYVPRDAAALSVGADETAAAIRAEATKRGIPLRIVRNGSRGMLWLETLVEVET
PEGRVAYGPVMAEDVAGLFDAGFLEGADHALAHGLTEKIPYFAKQERLTFARCGIIDPLS
VEDYRLHGGFRGLERALAMTPAEIVTEVTESGLRGRGGAGFPTGIKWNTVLNAKADQKYI
CCNADEGDSGTFADRMIMEGDPFCLIEGMTIAAIAVGATEGYIYIRSEYPHAVATMREAI
RLAYDEKWLGDEIHGTGHRFHLDVRVGAGAYICGEETSMLESLEGKRGTVRAKPPLPALE
GLFGKPTIVNNVLSLTSVPIILDKGANHYRDFGVGRSRGTLAFQLAGNIKHGGIVEKAFG
VTLHELLYEFGGGTITGRPIRAVQAGGPLGAYLPPSLFELPKDYEAFAAVEAMVGHGGIV
VFDDSVDMARQARFAMEFCAAESCGKCTPCRIGAVRGVEVMDNIIAGEKVQANITLLNDL
CEVMTDGSLCAMGGMTPIPVRSALKHFPEDFTRSPAAVAAE