PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS16025 FitnessBrowser__azobra:AZOBR_RS16025 (413 amino acids)

SeqID: AZOBR_RS16025 FitnessBrowser__azobra:AZOBR_RS16025
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595528: threonine dehydratase, biosynthetic[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS16025 FitnessBrowser__azobra:AZOBR_RS16025
VPFDSNLTTERPTFVTHLECAYTGERYEADTVHNLSKAGKPLLVRYDLEGVRGALTKDAL
AERPQDLWRYRELLPVRRVQDIVSLGEAVTPLVALPKLAAKLGAAELLVKDEGRLPTGSF
KARGLVMAVSMAKAFGIKHMAMPTNGNAGAALAAYATRAGIKTTIFCPEDTPEVNVSEIE
LQGATVYRVNGLIDDCGKIVGEGKAKAGWFDVSTLKEPYRIEGKKTMGLELAEQLGWEVP
DVIFYPTGGGTGLIGMWKAFAELEAIGFIGSKRPRMVAVQAAGCAPMVRAYEAGEEHAPR
WPDAHTIASGIRVPQAVGDFLILRAVRESGGFAVAVPDEAIQAALDEAAREEGFLLCPEG
AATYAAYKQALGDGRVGRDERAVLFNCATGLKYPLPPVHRTLDRHQPIDYSVF