PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS16155 FitnessBrowser__azobra:AZOBR_RS16155 (495 amino acids)

SeqID: AZOBR_RS16155 FitnessBrowser__azobra:AZOBR_RS16155
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS16155 FitnessBrowser__azobra:AZOBR_RS16155
MSKYLKIHSSDTVAVALEPLAQGTAIDGLGIVLLDEVPQGHKFAVTPHQPGDRVIKYGSV
IGLAKEAIPVGRHIHTHNIGTALGGLQNYAYAGPANDAAPAKREAPTIQAFVRANGEVGV
RNDLWIIPLVGCVNGLAKNAAKRFEKMGLLPEGSRVMVLEHPYGCSQLGGDLDNTRNILR
DFAIHPNAGGVLVMGLGCENNTRALFTQGFEHPDPRRLRYLTTQEVSDELEASLEAMTEL
AAVMREDKREPVGADRLRIGLKCGGSDGFSGITANPLLGALSDWLCGIGGATVLTEVPEM
FGAEHLLMERAESREVFDGVVTLINDFKQYFIDHNQPIYENPSPGNKAGGISTLEEKSLG
CTQKAGLSPVRDVIRYAERIRKPGLTLLEAPGNDGVAVTALAAAGCHIVLFTTGRGTPLG
GVVPTMKIATNTAMAEKKRHWIDFNAGPIAEATATVDSLLPSFIDSILAVANGKEARNEE
NDVHDLVIFKSGVTL