PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS16215 FitnessBrowser__azobra:AZOBR_RS16215 (609 amino acids)

SeqID: AZOBR_RS16215 FitnessBrowser__azobra:AZOBR_RS16215
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Cytoplasmic                   [matched PS50862: AA_TRNA_LIGASE_II Profile - Cytoplasmic ]
    SCL-BLAST-        Cytoplasmic                   [matched 97196714: Aspartyl-tRNA synthetase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            10.00
    Periplasmic            0.00
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS16215 FitnessBrowser__azobra:AZOBR_RS16215
MHPYRTHTCGQLREENAGQIVRLSGWINRKRDHGQLLFIDLRDHYGLTQCVVDTSNPAFQ
AAERLKLESVITVTGKVVKRTAETINDRLPTGRIEVQIAELSVQGEAEQIPLQVNQDTDA
GEDVRLRYRFLDLRRERIHENILLRSRVIASARRRMIDQGFTEFQTPILTASSPEGARDY
LVPSRNHPGKFYALPQAPQQFKQLLMVAGFDRYFQIAPCFRDEDARADRSPGEFYQLDFE
MSFVTQEDVFAAIEPVLHGIFDEFGGFRRETPPAIDKPPFRRISFAESMLKYGNDKPDLR
NPLEITDVTAVFKRDDVEFRAFKQTLEKGGVVRAIRAPKVSDKPRSFFDKLNDWARGLGA
PGLGYIIFEAAGGKGPIAKFVPEAAQAELRTAAGVEDGDAVFFVCDQPGPAAKLAGFART
KIGEELDLIEKNAFRFCWIVDFPMYELDEETNKVIFSHNPFSMPQGGLEALNTMNPLDIK
AYQYDIVCNGVELSSGAIRNHLPELMYKAFEIAGYPPEELEARFGGMLSAFKLGAPPHGG
SAPGIDRIVMLLADEPNIREVIAFPLNQRAEDLLMQAPAPVDQARLRELHLKLDLPKPKV
AAEAPKAAT