PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS16500 FitnessBrowser__azobra:AZOBR_RS16500 (673 amino acids)

SeqID: AZOBR_RS16500 FitnessBrowser__azobra:AZOBR_RS16500
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [19 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS16500 FitnessBrowser__azobra:AZOBR_RS16500
MELDEAKARELEEKFDSEIRFRPLSPLAGKLVGGLLIILSLFHYYTAGFGLLPEMEHRGI
HLSFVLGLVFLVFPFTKRGYGEPVMGTLLRPLGIGLQDWALAIGAVVAVMHVPLIPLDDL
AFRVGNPTTTDVILGSILIIVLLEATRRSVGWPLPIISLIFMSYAIWGPQMPGLLKHPGA
TVSQLVDHLYLTTQGVYGIALGVVATYVFHFVLFGVFATRIGLGQLFLDCAAWVAGRYAG
GPAKVAIFGSALFGMISGSSVANTVTVGSLTIPAMKRMGYKPHFAAAVESTASTGGQITP
PIMGAAAFLMIEFLGLPYTTIIMAAIVPAFMHFFGVLVQVHFEAKRNGLRGLRPDEMPDL
KEAFRRDWPTVIPLVVLIGILIAGYTPYMAAFWGITLCIAVGLLNPRKRMTIWEVLDGLR
DGAKYALAVGAAAATVGIIVGVVTLTGVGFKISYIVTSTAGEMAVWAGAFLPGWLADAKA
LTLLFTLIMTGVVCILMGCGIPTTANYIIMATIAAPALGLLGVAPIVAHFFVFYYGVLAD
ITPPVALAAYAAAGMAGADPFKTGNTAFRLGLAKALVPFVFVFSPSLLLVAPGFNWPDFF
IAFLGCIVGIVCLGATLTGWLLTNMRGWERLLLGIAAILLVTPELYSSLLGLALIVPVLL
RQMSARRLMPEAA