PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS16935 FitnessBrowser__azobra:AZOBR_RS16935 (480 amino acids)

SeqID: AZOBR_RS16935 FitnessBrowser__azobra:AZOBR_RS16935
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600456: argininosuccinate lyase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS16935 FitnessBrowser__azobra:AZOBR_RS16935
MSAEQPKPNSQDRAAQNVSAPAASQMWGGRFARGPAAIMERINASIGFDKRLADQDIAGS
KAHAAMLARQGIITQADADAIREGLDRVKEEIDSGAFTFKVELEDIHMNVEARLAELIGE
PAKRLHTGRSRNDQVATDFKLWVRDALDRADQGLKALQAALIDLAEKHTDTVMPGFTHLQ
AAQPVSFGHHLLAYVEMFGRDRGRLRDARARLNECPLGSAALAGTPYPIDRFMTAEALGF
DRPTANSLDAVSDRDFALEYLAAASICGMHLSRFAEEIVLWCSAQFRFIKLTDAFTTGSS
IMPQKKNPDAAELVRAKAGRVIGSLNSLLVAMKGLPLAYSKDMQEDKEPVFEADDTLALC
IAAMEGMVRDMQPNVPALREATDRGFLNATDLADWLVRELNIPFREAHHITGRAVKAAED
KRVGLTALTLEELQAIEPRITESVFPALSIEASLDSRRSFGGASPVRVREAVAAARERFL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory