PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS17090 FitnessBrowser__azobra:AZOBR_RS17090 (861 amino acids)

SeqID: AZOBR_RS17090 FitnessBrowser__azobra:AZOBR_RS17090
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596984: aconitate hydratase 2[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS17090 FitnessBrowser__azobra:AZOBR_RS17090
VLEAYRQHVAERAALGIPALPLSAKQTEELVDLLLNPPQGEEAFLVDLITHRVPAGVDDA
AKVKAAFLASLAKGNETSPLISKVKATELLGTMLGGFNIKPLIDLLGDAECGEAAAAGLK
TTLLMFDYFHDVKELADKGNANAKAVIQSWADAEWFTSRPEVPASLTLTIFKVSGETNTD
DLSPAPDAWSRPDIPLHALAMLKNPRPGIVPEDAGVRGPIKQLEDLKAKGNLVAYVGDVV
GTGSSRKSATNSVLWWTGEDIPYVPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSQ
METGDTVELRPYEGKALKNGAVIAEFTVKSDVIFDEVRAGGRIPLIIGRGLTARAREALG
LAPSTLFRLPSSPVDSGKGFTLAQKMVGRAVGLPEGQGVRPGTYCEPKMTTVGSQDTTGP
MTRDELKDLACLGFSADLVMQSFCHTAAYPKLVDVKTHRELPTFISTRGGVALRPGDGVI
HSWLNRLLMPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGA
LQPGVTLRDLVNAIPLYAIRQGLLTVEKKGKKNIFSGRILEIEGLPELKVEQAFELSDAS
AERSAAACTVRLNKEPIIEYMRSNITLMKWMIANGYEDARTLGRRIKAMEDWIANPSLLE
PDADAEYAAVIDIDLADIKEPIVACPNDPDDVKLLSEVAGDKIDEVFIGSCMTNIGHFRA
AGKILDGKTDIPTRLWIAPPTKMDAQILTEEGYYGVLGKSGARMEMPGCSLCMGNQAQIR
KGSTAISTSTRNFPNRLGIDTRVYLGSAELSAVAALLGKLPTPAEYLEQVSVVNQKAGDI
YRYMNFDQIKEFQDVADTVAA