PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS18900 FitnessBrowser__azobra:AZOBR_RS18900 (766 amino acids)

SeqID: AZOBR_RS18900 FitnessBrowser__azobra:AZOBR_RS18900
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 1172699: Phosphoenolpyruvate-protein phosphotransferase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS18900 FitnessBrowser__azobra:AZOBR_RS18900
MNGVVGDIPAGSPGFDGAASRRLLARLRDVMAGSGSGQERLDKIVTLIGMEMGADVCSCY
VMRAGEVLELFSTLGLNQDAVHNTRLRVGEGIVGDIAGHARPIALDNAPSHPSFAYRPET
GEDPFLSLAGVPILRGGKVRGVLVIQHKDRRRYTEVEVETLQTIAMVVAELVAQGELVNP
QEVASTGDPALLPARLSGTSLASGLAMGLAVIHRPQLTIRQMVSEDAESELARLNAAIAT
MHSAIDDLLNAAALAGLSEPKDILETYRMFAEDRGWLSRIREAIRMGLTAEGAVQQVQND
TRARMSHLTDPYIRERLLDLEDLTNRLLQHLAGRKSEADGGTLPEDIVLVARSMGPAELL
DYDQRRLRGVILEEGSPSSHVCIVARALNIPVVQAPDALNRIEPLDPVIVDGDHGQAFVR
PAEDIQMAFAEAVALRARKEQMYEAIRAQPSVTRDGVPISIQLNCGLLIDLPHLKASGAE
GIGLYRTEIPFMVRSTYPDVHAQTDLYSRILDQTDDKPVVFRTLDVGGDKMLPYIAASEG
EENPALGWRAIRIGLDHPSLLRQQLRALLRASAGRPLSVMFPMIAEVAEFDAARRLLDLE
INRLKGQGGEPPSRVRVGTMIEVPALLWQLPALLPRVDFLSVGSNDLTQYIFASDRGNPR
TSGRYDPLSPAMMSLLRRLVEACGDAGVPVSICGEMAGRPLDAMALIGIGFRTLSMSPPS
VGPVKTMLRSLDVAVLRQYMNGLYLRGDHSLRDKLRSFAKDHGVII