PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS19465 FitnessBrowser__azobra:AZOBR_RS19465 (254 amino acids)

SeqID: AZOBR_RS19465 FitnessBrowser__azobra:AZOBR_RS19465
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 128372: Lipoprotein 28 precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS19465 FitnessBrowser__azobra:AZOBR_RS19465
LVAGIATLATAVGASAEALKIGVTPGPHGQILEKVKPLAAKEGLDLTVLEFSDYVIPNQA
LSQGDLNANSFQHQPYLDNQVKDRGYELVSVAKTVIFPMGVYSKKVKSLDELPDGAKVSI
PNDPTNGGRALLLLQAKGLLKVKESAGLKASPLDISENPKKLQILELDAAQLPRSLDDVT
VAVINTNFAMESGLDPNKDAIAREASESPYANVIAVRKADQDKPWVATLVKVYQSDEVKQ
FILDRFKGAVVPAW