PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS20225 AZOBR_RS20225 3-hydroxyacyl-CoA dehydrogenase (777 amino acids)

SeqID: AZOBR_RS20225 AZOBR_RS20225 3-hydroxyacyl-CoA dehydrogenase
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598786: probable hydroxyacyl-CoA dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            4.99
    CytoplasmicMembrane    4.90
    Extracellular          0.10
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS20225 AZOBR_RS20225 3-hydroxyacyl-CoA dehydrogenase
MQIKRAAVIGSGVMGSGIAAHFANAGIPVVLLDIPAKEGDDRSAIAKGAVQRLLKTDPAP
FMHPKNAKLVTPGNLEDDLALLADVDWIVEAIVENPAVKADLYRRIDPVRKAGSVVSSNT
STIPLGVLVEGQSDAFRRDFLITHFFNPPRYMRLLEIVGGEATRPDALAAVADVCDRALG
KGVVRCKDTPGFIANRIGVYWIQTAINAAVDLGLTVEEADAIVGRPMGIPKTGVFGLVDL
VGLDLMPHIAKSLLATLPENDPYRAAFREHPVITRMIAEGYTGRKGKGGFYRLNRDGGAK
VKEVIDLSTGAYRRSDKPKLESVSTVGRDLRALADFPDKTGQYARRVLAHTLAYAASLVP
EIADSIVAVDEGMRLGYNWKQGPFELIDRLGTAWFADLCRSEGIPVPALVEQAAGRPFYR
VEDGRLQHLTTAGLYDTVVRPDGVLLLSDIKRASQPVWKNGSASLWDIGDGVLCVEFTSK
MNALDGDVMAAYGKAMKLIGDGKGNWKALVIHNESDNFSVGANLGLALFALNVGLWPQIE
ELVEGGQRAYRALKYAPFPVVSAPSGMALGGGCEILLHSDHVQAHAETYMGLVEVGVGLI
PGWGGCTEMLARHAANPRTPKGPMPPIAGAFETISLAKVAKSAAEAKDLLYLRASDGITM
NRDRLLADAKAKALELAANYTPPEKVTYTLPGPNGRAALELFLEGFALQGKATPHDMVVC
GKLAGILTGGPKADVTQPVTEDQMLALERRAFMELVRTEGTIDRVEHMLTTGKPLRN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory