PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS21100 FitnessBrowser__azobra:AZOBR_RS21100 (510 amino acids)

SeqID: AZOBR_RS21100 FitnessBrowser__azobra:AZOBR_RS21100
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS21100 FitnessBrowser__azobra:AZOBR_RS21100
MQEILAKLDAMRSGARLGGGEKRVAGQHAKGKLTARERIELFLDEGSFEEFDMFVQHRCN
DFGMEGQKVPGDGVVTGHGTVNGRLVFVFSQDFTVFGGSLSEAHAEKICKIMDQAMKVGA
PVIGLNDSGGARIQEGVASLGGYAEVFQRNVNASGVIPQISLIMGPCAGGAVYSPAMTDF
IFMVKDSSYMFVTGPDVVKTVTHEVVTAEELGGAITHSSKSGVADMAFENDVEALLQLRR
FIDFLPASNRERAPERPTADPIDRDDLSLDTLVPENPNKPYDMKELILKTVDEGDFFELQ
PDYAKNIIIGFGRMNGGTVGIVANQPMVLAGCLDIDSSKKAARFVRFCDAFEIPILTLVD
VPGFMPGTSQEYGGIIKHGAKLLFAYAEATVPKITVITRKAYGGAYDVMASKHLRGDINY
AWPSAEIAVMGPKGAVEIIFRGDIGDTAKIEARTEEYRQKFANPFVAASRGYIDDVIMPH
GTRRRVIKALSMLKNKQLQNPWRKHDNIPL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory