PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS21740 FitnessBrowser__azobra:AZOBR_RS21740 (562 amino acids)

SeqID: AZOBR_RS21740 FitnessBrowser__azobra:AZOBR_RS21740
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 123765: Urocanate hydratase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS21740 FitnessBrowser__azobra:AZOBR_RS21740
MSDTKPPANRRVIRAPHGTDLSAKSWLTEAPLRMLMNNLDPDVAENPDELVVYGGIGRAA
RNWDCFDAIVASLKTLNEDETLLVQSGKPVGVFRTHADAPRVLIANSNLVPHWATWDHFR
ELDAKGLMMYGQMTAGSWIYIGSQGIVQGTYETFVEVGRRHYGGDLKGRWILTGGLGGMG
GAQPLAATMAGASMLAVECSARSIERRLETKYLDRSATSLDEAMAILWEAQAAGTAVSVG
LLGNAAEVFPELVRRAKTDPRFRPDAVTDQTSAHDPLNGYLPAGWTMEEAETKRRSDPAA
VVAAAKASMATHVRAMLDFHAMGVPTLDYGNNIRQVAKDEGVADAFAFPGFVPAYIRPLF
CRGIGPFRWAALSGDPEDIYRTDAKVKELIPDNPHLHNWLDMARERIRFQGLPARICWVG
LGDRARLGLAFNEMVAKGELKAPIVIGRDHLDSGSVASPNRETEGMIDGSDAVSDWPLLN
ALLNCASGATWVSLHHGGGVGMGFSQHSGMVIVADGTDAAAKRLERVLTNDPGTGVMRHA
DAGYDIAKDCAKEQGLTLPMIG