PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS21760 FitnessBrowser__azobra:AZOBR_RS21760 (533 amino acids)

SeqID: AZOBR_RS21760 FitnessBrowser__azobra:AZOBR_RS21760
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Periplasmic                   [matched PS01040: SBP_BACTERIAL_5 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118906: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    CytoplasmicMembrane    0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS21760 FitnessBrowser__azobra:AZOBR_RS21760
MKRILLGAGLGVAATLALAAPAQAAKTLVYCSEGSPENFNPMVNTTGTSFDVSLPVYNNL
VQFEYGGTKVVPGLAEKWEVSEDGLTYTFHLRKGVKWHSNNDFKPTRDANADDVLWSFNR
QWKKDHPFHKVSGGAYDYFNDMAMPDLLKSIEKVDDYTVKFTLNKVEAPFIANLAMPFAP
IQSAEYAEALQKKNQIDKIDQAPIGTGPFQFVAYQKDAVIRYKAFEPYWGGKAQLDNLVF
AITPDAAVRYAKLKAGECHIVPYPNPADLEAMKKDSAITLMEQEGLNVGYLAFNVTKKPF
DDVRVRRALNMAIDKKAVVDAVYQGAGVPAKNPIPPTMWSYNKEIEDYPYDPERAKKLLA
EAGFPDGFETDLWAMPVQRPYNPNAKRMAEMMQADLAKVGIKAKVVQYEWGEYRKRLQAG
EHQMGMLGWTGDNGDPDNFLHVLLGCEAARAGGSNIAKWCYKEFDDLVVQAKRTTDIAAR
TKLYEQAQVIFKEEAPWLTVAHSVVHMALSKNVVDYKMDPFGIHRFYGVDLKQ