PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS23475 FitnessBrowser__azobra:AZOBR_RS23475 (312 amino acids)

SeqID: AZOBR_RS23475 FitnessBrowser__azobra:AZOBR_RS23475
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 20141693: Glycine betaine/L-proline transport system permease protein proW]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS23475 FitnessBrowser__azobra:AZOBR_RS23475
MDFKLPIGDWADAAVMFLLDHAQWLFDGIDLVVGAVADGVQAALTALPGVALAAIVVLIG
LWRNGWRFALFAAAALMVVAGLGMWHQTVDTLALVLTATAIALTIGVPLGIVAARNDRVE
TVVRPALDLMQTMPAFVYLIPAAMLFGLGRVPGIIATIIFAMPPVVRLTSLGIRQVPHEL
VEAGLAFGCTPRQLLFKVQMPTALPSIMAGINQTIMLSLSMVVIASMIGAGGVGNEVLRG
IQRLDIGLGVEGGLAVVILAILLDRITQSFGTPDAGGRSPRSALRSLLSRRRAAQPKDNA
HLSPTHGVTEAG