PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS23505 FitnessBrowser__azobra:AZOBR_RS23505 (462 amino acids)

SeqID: AZOBR_RS23505 FitnessBrowser__azobra:AZOBR_RS23505
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600299: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS23505 FitnessBrowser__azobra:AZOBR_RS23505
MNGLFCERALLPEGWASNVALRFDARGTLTAVERDASSDGLPRAAGPVIPGMPNLHSHAF
QRAMAGLTEYAGASEDSFWTWRDAMYGFVRRMTPEAAEAVAALLYMEMAKQGYTAVAEFH
YLHHSADGRPYADRAEMSRRILAAADTAGIGLTHLPVLYAHSGFGGKPPSDGQKRFINDV
DGLLSIVSAMEKAMGAERAGRRAGLALHSLRAVTPEEMRDALTGLDALDPGAPIHIHIAE
QTAEVDDCVAWSSKRPVEWLLENAPVGPRWCLVHATHVTPAEVDGMAASGAVAGLCLTTE
ANLGDGLFPAIPFLAQGGRFGVGSDSHISVSAAEELRLLEYGQRLVQRRRNVLRIGDCPS
IGGGLYRAAVAGGAQALGQPVTGGGVQVGQPADLVVLDADNPKLLSRTDDSLLDAYVFAS
DGHAVRDVIAAGRTVVREGRHVREDAIRAAYRRAIEGLRRDT