PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS23835 FitnessBrowser__azobra:AZOBR_RS23835 (428 amino acids)

SeqID: AZOBR_RS23835 FitnessBrowser__azobra:AZOBR_RS23835
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [10 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          CytoplasmicMembrane           [matched PS50850: MFS Profile - Cytoplasmic Membrane ]
    SCL-BLAST-        CytoplasmicMembrane           [matched 76363851: Hexuronate transporter]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS23835 FitnessBrowser__azobra:AZOBR_RS23835
MKIVRGLRWKVLALIMLGTIINYIDRNTLGILAPMLKEELHFTTEQYSYIVSVFQLCYSL
MQPIAGYVTDLIGLKFGYAMFAFVWGSAAALHAFSGGWQSMAFFRGLLGISEAAAMPSGA
KTAALWFPAKERSIATGWFNTGSSVGAMIAPPLVIWLSVTWSWQVAFVVTGMLGVGLSML
WLALYRNPENHPRLTKEEHAYILDGQEQVQLPKPSMKRVVTMRKFWGIAAARFLTEPAWQ
TFSFWIPLYMVSTRGMDIKQFALFAWLPFLFADIGCVLSGYLSPFFAKRFRMSLVNSRIA
GIGIGAVCMIGPALIGLTSSPITAIFLFSVGAFAHQMLSSLLYALVTDTFEKQDVATATG
FGGMAGYMGGMIFSLIIGQLASTIGYEPLFVCLSVFDITAFIVVLVVLGQWGRNKVTPPA
VPSGAHAD