PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS24275 FitnessBrowser__azobra:AZOBR_RS24275 (772 amino acids)

SeqID: AZOBR_RS24275 FitnessBrowser__azobra:AZOBR_RS24275
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS24275 FitnessBrowser__azobra:AZOBR_RS24275
MATTHTLGFPRIGAKRELKFALEAYWKGASSRDELVRVGADLRKRHWRDQGALDLVPVGD
FAFYDQVLDMSFTLGNLPERVKGFHGDALDNYFRVARGRSAETAAHSAEEHGGCCGGVAA
GEMTKWFDTNYHYIVPEFDAGTTFTLDASRLLEQLAEAKAQGVKAKPVIVGPVTYLALGK
AKDGSDKLALLPRLLPVYAGLLQALTDQGVEWVQIDEPILVTELEAAWRDAFTQAYRALG
TGAVKLLLATYFGQLQDNLPLACSLPVQGLHLDAITARDEVDALIQALPTDRVVSLGVVN
GRNIWKTDLGATLDWLEPVAERLGERLWIAPSCSLLHVPVDLAGERKLDEEARSWLAFAV
QKLEEIRVLAIALTPGRDGGRAAVAAELDANRAAVEARRHSPRVNNPAVKAAVAAIDARL
GRRKSAFIERAAKQATRLNLPKFPTTTIGSFPQTKEIRQARSQFKAGTIDAVAYTEAMRG
EIARSVREQEALGLDVLVHGEAERNDMVEYFGEQLDGYVFSQGGWVQSYGSRCVKPPILF
GDISRPRAMTVDWIAYAASLTDKPMKGMLTGPVTILNWSFVRDDQPRSESCRQLALAIRE
EVLDLETAGVGVIQIDEAALREGLPLRKSQWQAYLDWAVESFRITANGVADETQIHTHMC
YSEFNDIIASIAAMDADVITIETSRSDMELLDAFDDFKYPNEIGPGVYDIHSPNIPTEGH
IVDLMKKAAERIPADRLWVNPDCGLKTRQWAEVLPALTNMVSAAKTLRATVA