PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS24625 FitnessBrowser__azobra:AZOBR_RS24625 (627 amino acids)

SeqID: AZOBR_RS24625 FitnessBrowser__azobra:AZOBR_RS24625
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118581: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS24625 FitnessBrowser__azobra:AZOBR_RS24625
MKVLSRWLLASVAVVAAGSVSANDSILKNEANPNNWASQLGNYAGQRYSPLDQITTNNVK
NLQVAWSFSTGVLRGHEGGPIVVGDVMYIHTPFPNKVFALDLNNPGRVIWKYESVQDPTV
IPVMCCDTVNRGVAVADGKVFLAQADNTLVALDAKTGKEVWKAKNGDHTKGETLTAAPLV
VKDKVFVGISGGEFGVRGHLTAYDTNSGKMVWRAFSTGPDADVKIDPSKTMMMGKPIGQK
DLGVSTWPGEEWKRGGGTTWGWYTYDPALNLIYYGTGNPGTWNPTQRAVDKDRAKSDNKW
SMTIFARDPDTGEAKWVYQKTPFDEWDFDGVNENILADINMNGQQRKVLVNFDRNGFAYT
LDRATGELLVAQKFDPTVNWATDVDMKTGRPNVVDKYSTFANGEDKNTAAVCPAALGSKD
QQPASFSPDTGLFYVPTNHICMDYEPFSVSYTAGQAYVGSTVSMYPTPNSHGGMGNFIAW
DAAAGKIVWSRPERFAVWSGALSTKGGVAYYGTLEGYLVAVDMKDGKELWRFKTPSGIIG
NINTYTHNGKQYVAVLSGVGGWAGIGLAAGLTQEAGAQAWHNAVHPGHTEGGGVATAGLG
AVGAHQSLGEYTQLGGVLTVFHVPDQK