PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS24710 FitnessBrowser__azobra:AZOBR_RS24710 (360 amino acids)

SeqID: AZOBR_RS24710 FitnessBrowser__azobra:AZOBR_RS24710
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 731052: sn-glycerol-3-phosphate transport ATP-binding protein ugpC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS24710 FitnessBrowser__azobra:AZOBR_RS24710
MSGIRIKNLRKSFGTYTALHGIDLQVPNGTLLALLGPSGCGKSTTLQLLAGFEAPTEGEI
WADDVLLSSARGVLPPEKRGISLVFQNYAVWPHKTVAENVAFGLAIRRLPKAEIAERLDR
TLRTVRLEALRDRYPSELSGGQQQRVALARALAVEPRILLLDEPLSNLDAHLREEMRFEI
RQVHDLLGLTTVYVTHDQSEALVTADRIAVMKSGHLQQLGSPEDIFERPSNAFVATFIGA
NNELAGTSEGNGAIRVGSHVLTAPDRSGAAHGGTVSLCVRPSQVRLFGAEETGLPAEGCN
VLSGTVQRSAYLGEYRDVLVDLGGGRTLRAFIPPAQSFAPGSVVTALLPIGSCQILGPAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory