PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS25280 FitnessBrowser__azobra:AZOBR_RS25280 (264 amino acids)

SeqID: AZOBR_RS25280 FitnessBrowser__azobra:AZOBR_RS25280
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [5 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3183271: Inner membrane ABC transporter permease protein yddQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS25280 FitnessBrowser__azobra:AZOBR_RS25280
LRLVVLCVALLALLAAAAGLLRPGDPMAMVGPRGLWPLTDGAFPLGTDQLGRDVAAQLLF
GARVSLAVGVGAAAVATLIGVGLGAVAGYFGGVADHLLSRLCDYVQTLPSFLLSMVLVAV
LAPSIGSVMLAIGLTSWPEIARLTRAEVLRIRNADWVLAARTMGLGHGHILLNHVLPNGI
APVVAMITAVVAHAVLVEAALAFLGLGDPNLVSWGAMIGNARPLLRTLWYLMALPGLAIF
ATVMVFTLLGNGLSERLDPREAAR