PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS25645 FitnessBrowser__azobra:AZOBR_RS25645 (370 amino acids)

SeqID: AZOBR_RS25645 FitnessBrowser__azobra:AZOBR_RS25645
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 12230875: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS25645 FitnessBrowser__azobra:AZOBR_RS25645
MTALKTASLAALMTGALAGTALAADTVKIGYQLPLTGETAQYGQDFRKAAEIALTEFNAS
GKPFKAEIVFEDSRSDAKEGTNIARKFVDDKAIVGVLGDFTSGVSMASAQVYKDAGMPQL
SQTASHPDYTKISKYQFRNIATQAQEGPYNAKWMLSKGYKNIAVIAEQTDWGQSVVSGFT
DGVKANGGTVVFSEFFNRGLKDYRSLISKLERAKPDAIYTGFFYEDGAQFLRQVQQLGIK
TPVYSTSAAYSPKLIELAGEAAEGVHLTSNFLPTDPAPHIQHFVTEWKAASNGAVPGQFP
AQAYDAVRIMLAAVEKAYPNPTREKVRDALAETKDFPGVTGKTSFSADREAEKELVKVEV
KGGAFVPVAD