PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS25655 FitnessBrowser__azobra:AZOBR_RS25655 (426 amino acids)

SeqID: AZOBR_RS25655 FitnessBrowser__azobra:AZOBR_RS25655
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597972: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS25655 FitnessBrowser__azobra:AZOBR_RS25655
IWQRPDSLWEATAPPPPALPVLKDSVEADLLVIGGGFTGLSAALHAAESGKRAVVLEASE
IGRGASGRNNGQVIPTLTRPDPEDLIAKFGQERGERFVALIRDSAETLFALIRRLNIDCA
AEQTGWVQPVHSPGRIAIAERRAKQWGSRGAPVELLDRAGISALLGTDAYYGGWMNRSGG
HINPLALARGLAGKAVEAGASVFINSPVLSVERRGDRWVARTPDGTVTTHALVLGTNGYA
AAVFPEIRTEVVPVLSWQMATQPLDEAQRRSILPGRQAMSDTHGDLRFMRYTADHRLVSG
GALLVPVDGADRLRRIVGLRLASMFPTLRGLRFDYVWNGRIAMTTDYTPRVHQLGPNAFT
WAGCNGRGVALSVSLGRELAYAALGRDPAELALPLTEPRPLPFNDLLQRIGPFKLLQYRW
NDIREI