PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS25900 FitnessBrowser__azobra:AZOBR_RS25900 (584 amino acids)

SeqID: AZOBR_RS25900 FitnessBrowser__azobra:AZOBR_RS25900
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.50
    OuterMembrane          2.50
    Periplasmic            2.50
    Extracellular          2.50
    Cytoplasmic            0.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS25900 FitnessBrowser__azobra:AZOBR_RS25900
MRALYLASASAAALLLSSAPAFADIEAAKRWIDSEFQPSTLSKEDQLKEMQWFIDAAKPF
AGMEINVVSETITTHEYEARTLARAFSEITGIKLRHDLIQEGDVVEKIQTQMQSGKNIYD
AWINDSDLIGTHFRYKQVVPLTDWMDGEGKDVTLPTLDVKDFIGTSFTTAPDGKLYQLPD
QQFANLYWFRYDWFTNPDIKAKFKAKYGYDLGVPVNWSAYEDIAEFFTNDVKEIDGVKVY
GHMDYGKKDPSLGWRFTDAWLSMAGNGDKGLPNGKPVDEWGIRMEGCSPVGSSIERGGDT
NGPAAVYSVTKYVEWLKKYAPPQAAGMTFSESGPVPAQGNVAQQMFWYTAFTADMVKDGL
PVVNADGTPKWRMAPSPKGAYWKDGMKLGYQDAGSWTLLKSTPVDRRKAAWLYAQFTMSK
SVSLKKSHVGLTFIRESDIWDKSFTERAPKLGGLVEFYRSPARVQWTPTGVNVPDYPKLA
QLWWQNIGDASSGAKTPQAAMDALAAAQDSVMERLERSGVQGECGPKLNKKESAEFWFAK
AEKDGTTAPQRKLSNEKPKGETVDYDQLIKSWPASPPKKAAMVQ