PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS26245 FitnessBrowser__azobra:AZOBR_RS26245 (305 amino acids)

SeqID: AZOBR_RS26245 FitnessBrowser__azobra:AZOBR_RS26245
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 3183460: Glutathione transport system permease protein gsiC]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS26245 FitnessBrowser__azobra:AZOBR_RS26245
MLAYSLKRLLLAVLVAVTVSVGSFALLRAAGDPAVAMAGHSATASDIEFIRETYGFNRPL
PVQYADWLVKALQGDFGESLYFRMPVSRMLADKLPTTMTLGGLALAFALCVGLPLGIIAA
IRPNSWIDRAALLVSVTGQAMPTFWFALVLVVLFSITFPLLPPSGSGTWKHFVMPTVVLG
YYATPAIMRLTRAGMLEVLASDYIRTARAKGLHPAVVLLKHALRNAVIPVVSLSAVQFGF
MLGGSVVVETVFALHGTGQLAWESISRSDLPTVQAIVLVLSSFYVVLSLIADLLNAWLDP
RIRVA