PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS26360 FitnessBrowser__azobra:AZOBR_RS26360 (305 amino acids)

SeqID: AZOBR_RS26360 FitnessBrowser__azobra:AZOBR_RS26360
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3913247: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS26360 FitnessBrowser__azobra:AZOBR_RS26360
MDDLGWRSVLFVPASRPDRFDKALAAGADAVCVDLEDAVAPAHKQDARAAAMRFVADGSN
GGSGGGGGGGGGGGGPDRVIRINTLRSVAGMRDALALIEARPSGGTVVVPKIDSPEEVCW
LDQLLTEAGLDLRLVAQIETLRGVDQAAAITAASRRVSAVMFGGLDLAAELGVPASWDGL
LYGRSRVVHAAARAGIPAIDMPFVAVRDADGCRAEAQRALALGFTAKMAIHPGQVPTIND
AYTPTPDEVADAERIVTAWKNAPDGVIQVDGKMVERPIVLAMRRTLARAQAPERASTSTR
HGDAA