PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on AZOBR_RS26565 FitnessBrowser__azobra:AZOBR_RS26565 (567 amino acids)

SeqID: AZOBR_RS26565 FitnessBrowser__azobra:AZOBR_RS26565
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [8 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 79076: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>AZOBR_RS26565 FitnessBrowser__azobra:AZOBR_RS26565
MEYLAHILVMVCLYGILATSFNLLIGFGGIFALAHATFYASGAYAAGILATKLGIGFPLT
LLAGMVVTAGIGLLVAFPAMRVGSHYLVVITLALQAITIDVLMNSKPLTGGPDGIAGIPP
VSLFGTALTSPVTFLPLAVVMAALCCAVAWRLGASPFGRSLRAMRENEAAAQAVGKNLVR
MKLVVFAMSAGLASVAGTLVAHYIAFVNPESFTIEETILILAMVILGGMGNLWGSLAGAA
ILVLLPEGLKFVHVPGDIADMVRQVIYGVVLIVILRLRTEGLFPETVFRTPTGAARSSVP
ANGQLMGALERAGGTPGEVVVSATSLSKHFGGIQAVKDLTIDLKRGEIVGLIGPNGAGKT
TAFNLLSGFLRPTGGTILYRGRDMTTLKPHEVVAAGLARSFQDLKLFTKLTVVENILVSL
PAQPGDRPLDVYFRPGLVRRADRENVARALEIASFVGLLAKADETAANLSYAEEKLLVIA
RLLATGADVLLLDEPLSGLDTVTVERICGVIRDLARANKAVCIIEHNLEVIRGVCDEIVF
IDEGRVLTKGPPDTLMRDRELAERYFG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory